IL_9E6Q_013

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GCAAC*GAGUC

Length

10 nucleotides

Bulged bases

9E6Q|1|1|A|304, 9E6Q|1|1|A|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9E6Q|1|1|G|302
9E6Q|1|1|C|303
9E6Q|1|1|A|304
9E6Q|1|1|A|305
9E6Q|1|1|C|306
*
9E6Q|1|1|G|388
9E6Q|1|1|A|389
9E6Q|1|1|G|390
9E6Q|1|1|U|391
9E6Q|1|1|C|392

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AH

Large ribosomal subunit protein eL13

Chain AM

50S ribosomal protein L15e