IL_6YSI_058

3D structure

PDB id

6YSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6YSI|1|1|A|1790, 6YSI|1|1|C|1805, 6YSI|1|1|U|1809

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSI_058 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0543

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6YSI|1|1|U|1787
6YSI|1|1|G|1788
6YSI|1|1|C|1789
6YSI|1|1|A|1790
6YSI|1|1|A|1791
6YSI|1|1|A|1792
6YSI|1|1|C|1793
*
6YSI|1|1|G|1802
6YSI|1|1|G|1803
6YSI|1|1|A|1804
6YSI|1|1|C|1805
6YSI|1|1|G|1806
6YSI|1|1|U|1807
6YSI|1|1|A|1808
6YSI|1|1|U|1809
6YSI|1|1|A|1810

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2