IL_6YSI_088
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UGUAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 6YSI|1|1|U|2678, 6YSI|1|1|A|2679
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YSI_088 not in the Motif Atlas
- Homologous match to IL_5J7L_348
- Geometric discrepancy: 0.0944
- The information below is about IL_5J7L_348
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_23774.1
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
6YSI|1|1|U|2676
6YSI|1|1|G|2677
6YSI|1|1|U|2678
6YSI|1|1|A|2679
6YSI|1|1|C|2680
*
6YSI|1|1|G|2707
6YSI|1|1|G|2708
6YSI|1|1|U|2709
6YSI|1|1|A|2710
6YSI|1|1|G|2711
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L17
- Chain L
- 50S ribosomal protein L19
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