IL_6YST_096

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6YST|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YST_096 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1015

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6YST|1|A|C|2636
6YST|1|A|U|2637
6YST|1|A|G|2638
6YST|1|A|A|2639
6YST|1|A|G|2640
*
6YST|1|A|C|2774
6YST|1|A|G|2775
6YST|1|A|A|2776
6YST|1|A|G|2777
6YST|1|A|A|2778
6YST|1|A|U|2779
6YST|1|A|G|2780
6YST|1|A|A|2781
6YST|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13