IL_6YST_099

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

6YST|1|A|U|2689, 6YST|1|A|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YST_099 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0844

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6YST|1|A|U|2687
6YST|1|A|G|2688
6YST|1|A|U|2689
6YST|1|A|U|2690
6YST|1|A|C|2691
*
6YST|1|A|G|2718
6YST|1|A|G|2719
6YST|1|A|U|2720
6YST|1|A|A|2721
6YST|1|A|G|2722

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19