IL_6YST_163

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

6YST|1|a|A|1257, 6YST|1|a|A|1280, 6YST|1|a|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YST_163 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.2809

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6YST|1|a|G|1255
6YST|1|a|A|1256
6YST|1|a|A|1257
6YST|1|a|G|1258
*
6YST|1|a|C|1277
6YST|1|a|G|1278
6YST|1|a|G|1279
6YST|1|a|A|1280
6YST|1|a|C|1281
6YST|1|a|C|1282

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14