IL_6YSU_137
3D structure
- PDB id
- 6YSU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6YSU|1|a|A|532, 6YSU|1|a|U|534, 6YSU|1|a|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YSU_137 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2612
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6YSU|1|a|G|515
6YSU|1|a|PSU|516
6YSU|1|a|G|517
6YSU|1|a|C|518
6YSU|1|a|C|519
6YSU|1|a|A|520
6YSU|1|a|G|521
*
6YSU|1|a|C|528
6YSU|1|a|G|529
6YSU|1|a|G|530
6YSU|1|a|U|531
6YSU|1|a|A|532
6YSU|1|a|A|533
6YSU|1|a|U|534
6YSU|1|a|A|535
6YSU|1|a|C|536
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
- Chain y
- Alternative stalled-ribosome rescue factor B
Coloring options: