IL_6YT9_024
3D structure
- PDB id
- 6YT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6YT9|1|2|A|529, 6YT9|1|2|U|531, 6YT9|1|2|A|532
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YT9_024 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.105
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6YT9|1|2|G|512
6YT9|1|2|U|513
6YT9|1|2|G|514
6YT9|1|2|C|515
6YT9|1|2|C|516
6YT9|1|2|A|517
6YT9|1|2|G|518
*
6YT9|1|2|C|525
6YT9|1|2|G|526
6YT9|1|2|G|527
6YT9|1|2|U|528
6YT9|1|2|A|529
6YT9|1|2|A|530
6YT9|1|2|U|531
6YT9|1|2|A|532
6YT9|1|2|C|533
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain e
- 30S ribosomal protein S4
- Chain m
- 30S ribosomal protein S12
Coloring options: