IL_6YT9_032

3D structure

PDB id

6YT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

6YT9|1|2|A|699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YT9_032 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0748

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

6YT9|1|2|U|681
6YT9|1|2|G|682
6YT9|1|2|U|683
6YT9|1|2|A|684
6YT9|1|2|G|685
*
6YT9|1|2|C|696
6YT9|1|2|G|697
6YT9|1|2|U|698
6YT9|1|2|A|699
6YT9|1|2|G|700
6YT9|1|2|A|701
6YT9|1|2|G|702
6YT9|1|2|A|703

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S11