IL_6YT9_044
3D structure
- PDB id
- 6YT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAGAAG*CCACG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YT9_044 not in the Motif Atlas
- Homologous match to IL_5J7L_063
- Geometric discrepancy: 0.0963
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6YT9|1|4|C|1427
6YT9|1|4|A|1428
6YT9|1|4|G|1429
6YT9|1|4|A|1430
6YT9|1|4|A|1431
6YT9|1|4|G|1432
*
6YT9|1|4|C|1463
6YT9|1|4|C|1464
6YT9|1|4|A|1465
6YT9|1|4|C|1466
6YT9|1|4|G|1467
Current chains
- Chain 4
- 16S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain u
- 30S ribosomal protein S20
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