3D structure

PDB id
6YTF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UAC*GAUA
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YTF_004 not in the Motif Atlas
Geometric match to IL_4N0T_004
Geometric discrepancy: 0.3513
The information below is about IL_4N0T_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_99358.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
8

Unit IDs

6YTF|1|3|U|994
6YTF|1|3|A|995
6YTF|1|3|C|996
*
6YTF|1|3|G|1038
6YTF|1|3|A|1039
6YTF|1|3|U|1040
6YTF|1|3|A|1041

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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