IL_6Z18_001

3D structure

PDB id

6Z18 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RNA-10mer: CCGG(N4,N4-dimethyl-C)GCCGG; R32 form

Experimental method

X-RAY DIFFRACTION

Resolution

1.81 Å

Loop

Sequence

G(LV2)GC*G(LV2)GC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z18_001 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.1247

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6Z18|1|A|G|4
6Z18|1|A|LV2|5
6Z18|1|A|G|6
6Z18|1|A|C|7
*
6Z18|1|B|G|4
6Z18|1|B|LV2|5
6Z18|1|B|G|6
6Z18|1|B|C|7

Current chains

Chain A

RNA-10mer: CCGG(N4,N4-dimethyl-C)GCCGG

Chain B

RNA-10mer: CCGG(N4,N4-dimethyl-C)GCCGG

Nearby chains