IL_6Z1P_009
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAGC*GUUAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6Z1P|1|Ab|U|676, 6Z1P|1|Ab|G|680
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z1P_009 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.2055
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6Z1P|1|Ab|G|555
6Z1P|1|Ab|A|556
6Z1P|1|Ab|A|557
6Z1P|1|Ab|G|558
6Z1P|1|Ab|C|559
*
6Z1P|1|Ab|G|674
6Z1P|1|Ab|U|675
6Z1P|1|Ab|U|676
6Z1P|1|Ab|A|677
6Z1P|1|Ab|U|678
6Z1P|1|Ab|A|679
6Z1P|1|Ab|G|680
6Z1P|1|Ab|C|681
Current chains
- Chain Ab
- LSU rRNA_2
Nearby chains
- Chain AF
- bL35m
- Chain Aa
- LSU rRNA_1
- Chain Ae
- 50S ribosomal protein L4
- Chain Aq
- Ribosomal protein L15, putative
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