IL_6Z1P_010

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUU*AAAU

Length

7 nucleotides

Bulged bases

6Z1P|1|Ab|A|639

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_010 not in the Motif Atlas

Geometric match to IL_5F5F_003

Geometric discrepancy: 0.2004

The information below is about IL_5F5F_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

6Z1P|1|Ab|A|577
6Z1P|1|Ab|U|578
6Z1P|1|Ab|U|579
*
6Z1P|1|Ab|A|638
6Z1P|1|Ab|A|639
6Z1P|1|Ab|A|640
6Z1P|1|Ab|U|641

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain Ac

Ribosomal protein L2