IL_6Z1P_050

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

6Z1P|1|Ab|A|1657, 6Z1P|1|Ab|U|1663, 6Z1P|1|Ab|U|1682

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_050 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1759

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

6Z1P|1|Ab|C|1653
6Z1P|1|Ab|A|1654
6Z1P|1|Ab|A|1655
6Z1P|1|Ab|A|1656
6Z1P|1|Ab|A|1657
6Z1P|1|Ab|U|1658
6Z1P|1|Ab|U|1659
6Z1P|1|Ab|C|1660
6Z1P|1|Ab|C|1661
6Z1P|1|Ab|U|1662
6Z1P|1|Ab|U|1663
6Z1P|1|Ab|G|1664
*
6Z1P|1|Ab|C|1680
6Z1P|1|Ab|C|1681
6Z1P|1|Ab|U|1682
6Z1P|1|Ab|G|1683

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain BC

mS38

Chain Bb

Small subunit ribosomal RNA; SSU rRNA