IL_6Z1P_101

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6Z1P|1|Bb|A|527, 6Z1P|1|Bb|U|529, 6Z1P|1|Bb|A|530

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_101 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.149

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6Z1P|1|Bb|G|510
6Z1P|1|Bb|U|511
6Z1P|1|Bb|G|512
6Z1P|1|Bb|C|513
6Z1P|1|Bb|C|514
6Z1P|1|Bb|A|515
6Z1P|1|Bb|G|516
*
6Z1P|1|Bb|C|523
6Z1P|1|Bb|G|524
6Z1P|1|Bb|G|525
6Z1P|1|Bb|U|526
6Z1P|1|Bb|A|527
6Z1P|1|Bb|A|528
6Z1P|1|Bb|U|529
6Z1P|1|Bb|A|530
6Z1P|1|Bb|C|531

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain Bd

Ymf64

Chain Bl

Ribosomal protein S12

Chain By

mS33