IL_6Z1P_105

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUU*AUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_105 not in the Motif Atlas

Geometric match to IL_5C5W_001

Geometric discrepancy: 0.2134

The information below is about IL_5C5W_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6Z1P|1|Bb|C|596
6Z1P|1|Bb|U|597
6Z1P|1|Bb|U|598
6Z1P|1|Bb|U|599
*
6Z1P|1|Bb|A|622
6Z1P|1|Bb|U|623
6Z1P|1|Bb|A|624
6Z1P|1|Bb|G|625

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain BE

mS45

Chain Ba

SSU rRNA_1

Chain Bo

30S ribosomal protein S15

Chain Bp

30S ribosomal protein S16

Chain Bq

30S ribosomal protein S17

Chain Bv

mS26