IL_6Z1P_115

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAGUAUA*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_115 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.163

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6Z1P|1|Bb|G|865
6Z1P|1|Bb|G|866
6Z1P|1|Bb|A|867
6Z1P|1|Bb|G|868
6Z1P|1|Bb|U|869
6Z1P|1|Bb|A|870
6Z1P|1|Bb|U|871
6Z1P|1|Bb|A|872
*
6Z1P|1|Bb|U|883
6Z1P|1|Bb|A|884
6Z1P|1|Bb|A|885
6Z1P|1|Bb|A|886
6Z1P|1|Bb|A|887
6Z1P|1|Bb|C|888

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain BC

mS38

Chain Bl

Ribosomal protein S12