IL_6Z1P_123
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGG*UCCCUA
- Length
- 9 nucleotides
- Bulged bases
- 6Z1P|1|Bb|C|1212, 6Z1P|1|Bb|C|1213
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z1P_123 not in the Motif Atlas
- Geometric match to IL_4V88_451
- Geometric discrepancy: 0.1974
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6Z1P|1|Bb|U|1029
6Z1P|1|Bb|G|1030
6Z1P|1|Bb|G|1031
*
6Z1P|1|Bb|U|1211
6Z1P|1|Bb|C|1212
6Z1P|1|Bb|C|1213
6Z1P|1|Bb|C|1214
6Z1P|1|Bb|U|1215
6Z1P|1|Bb|A|1216
Current chains
- Chain Bb
- SSU rRNA_2
Nearby chains
- Chain BX
- Ribosomal protein S3
- Chain Bd
- Ymf64
- Chain Bj
- Ymf59
- Chain Bn
- Ribosomal protein S14
- Chain By
- mS33
Coloring options: