IL_6Z1P_138

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAAU*AGUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_138 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.1949

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6Z1P|1|Bb|U|1435
6Z1P|1|Bb|A|1436
6Z1P|1|Bb|A|1437
6Z1P|1|Bb|U|1438
*
6Z1P|1|Bb|A|1541
6Z1P|1|Bb|G|1542
6Z1P|1|Bb|U|1543
6Z1P|1|Bb|A|1544

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain Ab

Large subunit ribosomal RNA; LSU rRNA

Chain Ap

Ribosomal protein L14

Chain Bq

30S ribosomal protein S17