IL_6Z1P_161

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUAAU*AGAAU

Length

10 nucleotides

Bulged bases

6Z1P|1|Ab|A|2463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z1P_161 not in the Motif Atlas

Geometric match to IL_7A0S_033

Geometric discrepancy: 0.2106

The information below is about IL_7A0S_033

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

6Z1P|1|Ab|A|2435
6Z1P|1|Ab|U|2436
6Z1P|1|Ab|A|2437
6Z1P|1|Ab|A|2438
6Z1P|1|Ab|U|2439
*
6Z1P|1|Ab|A|2460
6Z1P|1|Ab|G|2461
6Z1P|1|Ab|A|2462
6Z1P|1|Ab|A|2463
6Z1P|1|Ab|U|2464

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AG

Ribosomal protein

Chain Ag

Ymf60

Chain Ao

50S ribosomal protein L13