3D structure

PDB id
6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GAAUGUAG*UAUUAUAGC
Length
17 nucleotides
Bulged bases
6Z6J|1|C1|U|534, 6Z6J|1|C1|U|558
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Z6J_019 not in the Motif Atlas
Homologous match to IL_5TBW_020
Geometric discrepancy: 0.1344
The information below is about IL_5TBW_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_07703.1
Basepair signature
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6Z6J|1|C1|G|531
6Z6J|1|C1|A|532
6Z6J|1|C1|A|533
6Z6J|1|C1|U|534
6Z6J|1|C1|G|535
6Z6J|1|C1|U|536
6Z6J|1|C1|A|537
6Z6J|1|C1|G|538
*
6Z6J|1|C1|U|553
6Z6J|1|C1|A|554
6Z6J|1|C1|U|555
6Z6J|1|C1|U|556
6Z6J|1|C1|A|557
6Z6J|1|C1|U|558
6Z6J|1|C1|A|559
6Z6J|1|C1|G|560
6Z6J|1|C1|C|561

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LM
60S ribosomal protein L14-A
Chain LS
60S ribosomal protein L20-A

Coloring options:


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