IL_6Z6J_039
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6J_039 not in the Motif Atlas
- Homologous match to IL_5TBW_038
- Geometric discrepancy: 0.0945
- The information below is about IL_5TBW_038
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6Z6J|1|C1|G|991
6Z6J|1|C1|A|992
6Z6J|1|C1|G|993
6Z6J|1|C1|G|994
6Z6J|1|C1|U|995
6Z6J|1|C1|A|996
6Z6J|1|C1|A|997
*
6Z6J|1|C1|U|1052
6Z6J|1|C1|A|1053
6Z6J|1|C1|A|1054
6Z6J|1|C1|A|1055
6Z6J|1|C1|U|1056
6Z6J|1|C1|A|1057
6Z6J|1|C1|U|1058
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain C4
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LF
- 60S ribosomal protein L7-A
- Chain LI
- 60S ribosomal protein L10
- Chain LS
- 60S ribosomal protein L20-A
- Chain LT
- 60S ribosomal protein L21-A
Coloring options: