IL_6Z6J_062

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_062 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0882

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6Z6J|1|C1|G|1444
6Z6J|1|C1|U|1445
6Z6J|1|C1|A|1446
6Z6J|1|C1|G|1447
6Z6J|1|C1|U|1448
6Z6J|1|C1|A|1449
6Z6J|1|C1|G|1450
*
6Z6J|1|C1|C|2354
6Z6J|1|C1|G|2355
6Z6J|1|C1|A|2356
6Z6J|1|C1|A|2357
6Z6J|1|C1|A|2358
6Z6J|1|C1|C|2359

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4-A

Chain LP

60S ribosomal protein L17-A