3D structure

PDB id
6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUAAG*CGAAAG
Length
11 nucleotides
Bulged bases
6Z6J|1|C1|A|1588, 6Z6J|1|C1|A|1589
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Z6J_065 not in the Motif Atlas
Homologous match to IL_5TBW_063
Geometric discrepancy: 0.1088
The information below is about IL_5TBW_063
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

6Z6J|1|C1|C|1532
6Z6J|1|C1|U|1533
6Z6J|1|C1|A|1534
6Z6J|1|C1|A|1535
6Z6J|1|C1|G|1536
*
6Z6J|1|C1|C|1585
6Z6J|1|C1|G|1586
6Z6J|1|C1|A|1587
6Z6J|1|C1|A|1588
6Z6J|1|C1|A|1589
6Z6J|1|C1|G|1590

Current chains

Chain C1
25S rRNA

Nearby chains

Chain C3
5.8S ribosomal RNA; 5.8S rRNA
Chain LA
60S ribosomal protein L2-A
Chain Lg
60S ribosomal protein L34-A
Chain Lj
60S ribosomal protein L37-A
Chain Ll
60S ribosomal protein L39

Coloring options:


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