3D structure

PDB id
6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUUAGUAC*GGAACAG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Z6J_117 not in the Motif Atlas
Homologous match to IL_8C3A_125
Geometric discrepancy: 0.1122
The information below is about IL_8C3A_125
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.8
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

6Z6J|1|C1|C|3018
6Z6J|1|C1|U|3019
6Z6J|1|C1|U|3020
6Z6J|1|C1|A|3021
6Z6J|1|C1|G|3022
6Z6J|1|C1|U|3023
6Z6J|1|C1|A|3024
6Z6J|1|C1|C|3025
*
6Z6J|1|C1|G|3030
6Z6J|1|C1|G|3031
6Z6J|1|C1|A|3032
6Z6J|1|C1|A|3033
6Z6J|1|C1|C|3034
6Z6J|1|C1|A|3035
6Z6J|1|C1|G|3036

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LB
60S ribosomal protein L3
Chain LH
60S ribosomal protein L9-A
Chain LV
60S ribosomal protein L23-A
Chain Lm
Ubiquitin-60S ribosomal protein L40

Coloring options:


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