IL_6Z6J_156

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

6Z6J|1|C2|U|313, 6Z6J|1|C2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_156 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.141

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6Z6J|1|C2|U|311
6Z6J|1|C2|A|312
6Z6J|1|C2|U|313
6Z6J|1|C2|C|314
6Z6J|1|C2|A|315
6Z6J|1|C2|A|316
*
6Z6J|1|C2|U|348
6Z6J|1|C2|U|349
6Z6J|1|C2|U|350
6Z6J|1|C2|C|351
6Z6J|1|C2|A|352
6Z6J|1|C2|A|353
6Z6J|1|C2|C|354
6Z6J|1|C2|G|355

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8-A

Chain SL

40S ribosomal protein S11-A

Chain SX

40S ribosomal protein S23-A