IL_6Z6J_170

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6Z6J|1|C2|A|579, 6Z6J|1|C2|U|581, 6Z6J|1|C2|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_170 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1082

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6Z6J|1|C2|G|562
6Z6J|1|C2|U|563
6Z6J|1|C2|G|564
6Z6J|1|C2|C|565
6Z6J|1|C2|C|566
6Z6J|1|C2|A|567
6Z6J|1|C2|G|568
*
6Z6J|1|C2|C|575
6Z6J|1|C2|G|576
6Z6J|1|C2|G|577
6Z6J|1|C2|U|578
6Z6J|1|C2|A|579
6Z6J|1|C2|A|580
6Z6J|1|C2|U|581
6Z6J|1|C2|U|582
6Z6J|1|C2|C|583

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SD

40S ribosomal protein S3

Chain SX

40S ribosomal protein S23-A

Chain Se

40S ribosomal protein S30-A