IL_6Z6J_182

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

6Z6J|1|C2|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_182 not in the Motif Atlas

Homologous match to IL_4V88_431

Geometric discrepancy: 0.0945

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6Z6J|1|C2|C|874
6Z6J|1|C2|G|875
6Z6J|1|C2|G|876
6Z6J|1|C2|G|877
6Z6J|1|C2|G|878
*
6Z6J|1|C2|C|950
6Z6J|1|C2|A|951
6Z6J|1|C2|A|952
6Z6J|1|C2|G|953

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1-A

Chain SN

40S ribosomal protein S13

Chain Sa

40S ribosomal protein S26-B