IL_6Z6J_183

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_183 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.0958

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6Z6J|1|C2|G|885
6Z6J|1|C2|U|886
6Z6J|1|C2|A|887
6Z6J|1|C2|U|888
*
6Z6J|1|C2|A|924
6Z6J|1|C2|G|925
6Z6J|1|C2|A|926
6Z6J|1|C2|C|927

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain SB

40S ribosomal protein S1-A

Chain SO

40S ribosomal protein S14-A

Chain Sa

40S ribosomal protein S26-B