IL_6Z6J_245
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 6Z6J|1|C2|C|1274, 6Z6J|1|C2|U|1432, 6Z6J|1|C2|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6J_245 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1453
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86012.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6Z6J|1|C2|U|1272
6Z6J|1|C2|G|1273
6Z6J|1|C2|C|1274
6Z6J|1|C2|A|1275
6Z6J|1|C2|U|1276
6Z6J|1|C2|G|1277
6Z6J|1|C2|G|1278
*
6Z6J|1|C2|U|1430
6Z6J|1|C2|C|1431
6Z6J|1|C2|U|1432
6Z6J|1|C2|G|1433
6Z6J|1|C2|U|1434
6Z6J|1|C2|G|1435
6Z6J|1|C2|A|1436
6Z6J|1|C2|U|1437
6Z6J|1|C2|G|1438
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SD
- 40S ribosomal protein S3
- Chain SK
- 40S ribosomal protein S10-A
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29-A
Coloring options: