IL_6Z6K_069

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_069 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.1265

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6Z6K|1|C1|U|1645
6Z6K|1|C1|G|1646
6Z6K|1|C1|A|1647
6Z6K|1|C1|A|1648
6Z6K|1|C1|U|1649
*
6Z6K|1|C1|A|1806
6Z6K|1|C1|G|1807
6Z6K|1|C1|G|1808
6Z6K|1|C1|A|1809
6Z6K|1|C1|A|1810

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain LZ

60S ribosomal protein L27-A

Chain Lg

60S ribosomal protein L34-A