IL_6Z6K_084

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6Z6K|1|C1|U|2159, 6Z6K|1|C1|U|2175, 6Z6K|1|C1|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_084 not in the Motif Atlas

Homologous match to IL_8C3A_088

Geometric discrepancy: 0.0816

The information below is about IL_8C3A_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6Z6K|1|C1|C|2156
6Z6K|1|C1|G|2157
6Z6K|1|C1|A|2158
6Z6K|1|C1|U|2159
6Z6K|1|C1|G|2160
6Z6K|1|C1|G|2161
*
6Z6K|1|C1|U|2173
6Z6K|1|C1|G|2174
6Z6K|1|C1|U|2175
6Z6K|1|C1|U|2176
6Z6K|1|C1|G|2177
6Z6K|1|C1|A|2178
6Z6K|1|C1|C|2179
6Z6K|1|C1|G|2180

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain LA

60S ribosomal protein L2-A

Chain Lp

60S ribosomal protein L43-A