IL_6Z6K_119

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

6Z6K|1|C1|U|3056, 6Z6K|1|C1|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_119 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.1217

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6Z6K|1|C1|U|3054
6Z6K|1|C1|U|3055
6Z6K|1|C1|U|3056
6Z6K|1|C1|U|3057
6Z6K|1|C1|U|3058
6Z6K|1|C1|G|3059
*
6Z6K|1|C1|C|3084
6Z6K|1|C1|G|3085
6Z6K|1|C1|A|3086
6Z6K|1|C1|A|3087
6Z6K|1|C1|G|3088

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24-A

Chain Ld

60S ribosomal protein L31-A