IL_6Z6K_171

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6Z6K|1|C2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_171 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1458

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

6Z6K|1|C2|G|616
6Z6K|1|C2|U|617
6Z6K|1|C2|U|618
6Z6K|1|C2|A|619
6Z6K|1|C2|A|620
6Z6K|1|C2|A|621
6Z6K|1|C2|A|622
*
6Z6K|1|C2|U|1104
6Z6K|1|C2|C|1105

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein S23-A

Chain Sa

40S ribosomal protein S26-B