IL_6Z6K_240

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUAU*AUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_240 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.2114

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6Z6K|1|C1|A|3168
6Z6K|1|C1|U|3169
6Z6K|1|C1|A|3170
6Z6K|1|C1|U|3171
*
6Z6K|1|C1|A|3279
6Z6K|1|C1|U|3280
6Z6K|1|C1|U|3281
6Z6K|1|C1|U|3282

Current chains

Chain C1

25S rRNA

Nearby chains

Chain Lf

60S ribosomal protein L33-A