IL_6Z6L_042

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

6Z6L|1|L5|C|1214, 6Z6L|1|L5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6L_042 not in the Motif Atlas

Geometric match to IL_4KTG_005

Geometric discrepancy: 0.3914

The information below is about IL_4KTG_005

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6Z6L|1|L5|C|1082
6Z6L|1|L5|U|1083
6Z6L|1|L5|C|1084
*
6Z6L|1|L5|G|1213
6Z6L|1|L5|C|1214
6Z6L|1|L5|C|1215
6Z6L|1|L5|C|1216
6Z6L|1|L5|G|1217

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29