IL_6Z6L_092

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6L_092 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.0845

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6Z6L|1|L5|G|2358
6Z6L|1|L5|U|2359
6Z6L|1|L5|A|2360
6Z6L|1|L5|G|2361
6Z6L|1|L5|U|2362
6Z6L|1|L5|A|2363
6Z6L|1|L5|G|2364
*
6Z6L|1|L5|C|3858
6Z6L|1|L5|G|3859
6Z6L|1|L5|A|3860
6Z6L|1|L5|A|3861
6Z6L|1|L5|A|3862
6Z6L|1|L5|C|3863

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17