IL_6Z6M_093

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6M_093 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0709

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6Z6M|1|L5|G|2358
6Z6M|1|L5|U|2359
6Z6M|1|L5|A|2360
6Z6M|1|L5|G|2361
6Z6M|1|L5|U|2362
6Z6M|1|L5|A|2363
6Z6M|1|L5|G|2364
*
6Z6M|1|L5|C|3858
6Z6M|1|L5|G|3859
6Z6M|1|L5|A|3860
6Z6M|1|L5|A|3861
6Z6M|1|L5|A|3862
6Z6M|1|L5|C|3863

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17