IL_6Z6M_100

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6M_100 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.1965

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6Z6M|1|L5|C|2589
6Z6M|1|L5|G|2590
6Z6M|1|L5|A|2591
6Z6M|1|L5|U|2592
6Z6M|1|L5|C|2593
*
6Z6M|1|L5|G|2752
6Z6M|1|L5|G|2753
6Z6M|1|L5|G|2754
6Z6M|1|L5|A|2755
6Z6M|1|L5|G|2756

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LZ

60S ribosomal protein L27

Chain Lg

60S ribosomal protein L34