IL_6Z6M_196

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

6Z6M|1|S2|U|305, 6Z6M|1|S2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6M_196 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3756

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6Z6M|1|S2|C|216
6Z6M|1|S2|A|217
6Z6M|1|S2|U|218
6Z6M|1|S2|U|219
*
6Z6M|1|S2|A|302
6Z6M|1|S2|C|303
6Z6M|1|S2|C|304
6Z6M|1|S2|U|305
6Z6M|1|S2|C|306
6Z6M|1|S2|G|307
6Z6M|1|S2|G|308
6Z6M|1|S2|G|309

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SI

40S ribosomal protein S8