IL_6Z6M_230

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6M_230 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.0932

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6Z6M|1|S2|G|942
6Z6M|1|S2|U|943
6Z6M|1|S2|A|944
6Z6M|1|S2|U|945
*
6Z6M|1|S2|A|981
6Z6M|1|S2|G|982
6Z6M|1|S2|A|983
6Z6M|1|S2|C|984

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a

Chain SB

40S ribosomal protein S3a

Chain SO

40S ribosomal protein S14