IL_6Z6M_250
3D structure
- PDB id
- 6Z6M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 6Z6M|1|S2|U|1494, 6Z6M|1|S2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6M_250 not in the Motif Atlas
- Homologous match to IL_4V88_451
- Geometric discrepancy: 0.1348
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6Z6M|1|S2|U|1333
6Z6M|1|S2|G|1334
6Z6M|1|S2|G|1335
*
6Z6M|1|S2|U|1492
6Z6M|1|S2|C|1493
6Z6M|1|S2|U|1494
6Z6M|1|S2|G|1495
6Z6M|1|S2|U|1496
6Z6M|1|S2|G|1497
6Z6M|1|S2|A|1498
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CD
- Plasminogen activator inhibitor 1 RNA-binding protein
- Chain SD
- 40S ribosomal protein S3
- Chain SK
- 40S ribosomal protein S10
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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