IL_6Z6M_256

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

6Z6M|1|S2|C|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6M_256 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.2386

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6Z6M|1|S2|U|1408
6Z6M|1|S2|A|1409
*
6Z6M|1|S2|U|1432
6Z6M|1|S2|C|1433
6Z6M|1|S2|C|1434
6Z6M|1|S2|C|1435
6Z6M|1|S2|C|1436
6Z6M|1|S2|C|1437
6Z6M|1|S2|A|1438

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20