IL_6Z6N_037

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

6Z6N|1|L5|G|748, 6Z6N|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6N_037 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1645

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6Z6N|1|L5|G|745
6Z6N|1|L5|A|746
6Z6N|1|L5|A|747
6Z6N|1|L5|G|748
6Z6N|1|L5|G|749
6Z6N|1|L5|U|750
6Z6N|1|L5|G|751
6Z6N|1|L5|G|752
*
6Z6N|1|L5|U|911
6Z6N|1|L5|G|912
6Z6N|1|L5|U|913
6Z6N|1|L5|U|914
6Z6N|1|L5|A|915
6Z6N|1|L5|C|916
6Z6N|1|L5|A|917
6Z6N|1|L5|G|918
6Z6N|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a