IL_6Z6N_085

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

6Z6N|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6N_085 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2495

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6Z6N|1|L5|U|1957
6Z6N|1|L5|A|1958
6Z6N|1|L5|U|1959
6Z6N|1|L5|A|1960
6Z6N|1|L5|G|1961
6Z6N|1|L5|A|1962
6Z6N|1|L5|C|1963
6Z6N|1|L5|A|1964
6Z6N|1|L5|G|1965
*
6Z6N|1|L5|C|2022
6Z6N|1|L5|C|2023
6Z6N|1|L5|G|2024
6Z6N|1|L5|A|2025
6Z6N|1|L5|A|2026

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain Lm

Ubiquitin-60S ribosomal protein L40