IL_6Z6N_169

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

6Z6N|1|L5|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6N_169 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.1772

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6Z6N|1|L5|G|5000
6Z6N|1|L5|U|5001
6Z6N|1|L5|U|5002
*
6Z6N|1|L5|G|5045
6Z6N|1|L5|U|5046
6Z6N|1|L5|C|5047
6Z6N|1|L5|A|5048
6Z6N|1|L5|G|5049
6Z6N|1|L5|C|5050

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31