IL_6ZCE_016

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AGAUAAAAAAUCAAG*CAU

Length

18 nucleotides

Bulged bases

6ZCE|1|A|A|217

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZCE_016 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.1656

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6ZCE|1|A|A|213
6ZCE|1|A|G|214
6ZCE|1|A|A|215
6ZCE|1|A|U|216
6ZCE|1|A|A|217
6ZCE|1|A|A|218
6ZCE|1|A|A|219
6ZCE|1|A|A|220
6ZCE|1|A|A|221
6ZCE|1|A|A|222
6ZCE|1|A|U|223
6ZCE|1|A|C|224
6ZCE|1|A|A|225
6ZCE|1|A|A|226
6ZCE|1|A|G|243
*
6ZCE|1|A|C|250
6ZCE|1|A|A|251
6ZCE|1|A|U|252

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain J

40S ribosomal protein S8-A

Chain M

40S ribosomal protein S11-A