IL_6ZCE_031

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZCE_031 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.172

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

6ZCE|1|A|A|550
6ZCE|1|A|G|551
6ZCE|1|A|G|552
6ZCE|1|A|G|553
6ZCE|1|A|C|554
6ZCE|1|A|A|555
6ZCE|1|A|A|556
6ZCE|1|A|G|557
*
6ZCE|1|A|C|587
6ZCE|1|A|U|588

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain D

40S ribosomal protein S2

Chain K

40S ribosomal protein S9-A

Chain f

40S ribosomal protein S30-A