3D structure

PDB id
6ZCE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast ABCE1-bound 43S pre-initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
CCGG*CGGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZCE_037 not in the Motif Atlas
Geometric match to IL_5J7L_283
Geometric discrepancy: 0.2897
The information below is about IL_5J7L_283
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

6ZCE|1|A|C|645
6ZCE|1|A|C|646
6ZCE|1|A|G|647
6ZCE|1|A|G|648
*
6ZCE|1|A|C|686
6ZCE|1|A|G|687
6ZCE|1|A|G|688
6ZCE|1|A|G|689

Current chains

Chain A
18S ribosomal RNA (1719-MER)

Nearby chains

Chain X
40S ribosomal protein S22-A

Coloring options:


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